I constructed basic scaffolding.

MobiReader/build.xml

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+<?xml version="1.0" encoding="UTF-8"?><!-- You may freely edit this file. See commented blocks below for --><!-- some examples of how to customize the build. --><!-- (If you delete it and reopen the project it will be recreated.) --><!-- By default, only the Clean and Build commands use this build script. --><project name="MobiReader" default="default" basedir="." xmlns:fx="javafx:com.sun.javafx.tools.ant">
+    <description>Builds, tests, and runs the project MobiReader.</description>
+    <import file="nbproject/build-impl.xml"/>
+    <!--
+
+    There exist several targets which are by default empty and which can be 
+    used for execution of your tasks. These targets are usually executed 
+    before and after some main targets. Those of them relevant for JavaFX project are: 
+
+      -pre-init:                 called before initialization of project properties
+      -post-init:                called after initialization of project properties
+      -pre-compile:              called before javac compilation
+      -post-compile:             called after javac compilation
+      -pre-compile-test:         called before javac compilation of JUnit tests
+      -post-compile-test:        called after javac compilation of JUnit tests
+      -pre-jfx-jar:              called before FX SDK specific <fx:jar> task
+      -post-jfx-jar:             called after FX SDK specific <fx:jar> task
+      -pre-jfx-deploy:           called before FX SDK specific <fx:deploy> task
+      -post-jfx-deploy:          called after FX SDK specific <fx:deploy> task
+      -pre-jfx-native:           called just after -pre-jfx-deploy if <fx:deploy> runs in native packaging mode
+      -post-jfx-native:          called just after -post-jfx-deploy if <fx:deploy> runs in native packaging mode
+      -post-clean:               called after cleaning build products
+
+    (Targets beginning with '-' are not intended to be called on their own.)
+
+    Example of inserting a HTML postprocessor after javaFX SDK deployment:
+
+        <target name="-post-jfx-deploy">
+            <basename property="jfx.deployment.base" file="${jfx.deployment.jar}" suffix=".jar"/>
+            <property name="jfx.deployment.html" location="${jfx.deployment.dir}${file.separator}${jfx.deployment.base}.html"/>
+            <custompostprocess>
+                <fileset dir="${jfx.deployment.html}"/>
+            </custompostprocess>
+        </target>
+
+    Example of calling an Ant task from JavaFX SDK. Note that access to JavaFX SDK Ant tasks must be
+    initialized; to ensure this is done add the dependence on -check-jfx-sdk-version target:
+
+        <target name="-post-jfx-jar" depends="-check-jfx-sdk-version">
+            <echo message="Calling jar task from JavaFX SDK"/>
+            <fx:jar ...>
+                ...
+            </fx:jar>
+        </target>
+
+    For more details about JavaFX SDK Ant tasks go to
+    http://docs.oracle.com/javafx/2/deployment/jfxpub-deployment.htm
+
+    For list of available properties check the files
+    nbproject/build-impl.xml and nbproject/jfx-impl.xml.
+
+    -->
+</project>

MobiReader/manifest.mf

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+Manifest-Version: 1.0
+X-COMMENT: Main-Class will be added automatically by build
+

MobiReader/nbproject/configs/Run_as_WebStart.properties

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+# Do not modify this property in this configuration. It can be re-generated.
+$label=Run as WebStart

MobiReader/nbproject/configs/Run_in_Browser.properties

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+# Do not modify this property in this configuration. It can be re-generated.
+$label=Run in Browser

MobiReader/nbproject/genfiles.properties

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+build.xml.data.CRC32=14d4ff44
+build.xml.script.CRC32=df09ec1e
+build.xml.stylesheet.CRC32=28e38971@1.56.1.46
+# This file is used by a NetBeans-based IDE to track changes in generated files such as build-impl.xml.
+# Do not edit this file. You may delete it but then the IDE will never regenerate such files for you.
+nbproject/build-impl.xml.data.CRC32=14d4ff44
+nbproject/build-impl.xml.script.CRC32=52668f5e
+nbproject/build-impl.xml.stylesheet.CRC32=c6d2a60f@1.56.1.46

MobiReader/nbproject/project.properties

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+annotation.processing.enabled=true
+annotation.processing.enabled.in.editor=false
+annotation.processing.processor.options=
+annotation.processing.processors.list=
+annotation.processing.run.all.processors=true
+annotation.processing.source.output=${build.generated.sources.dir}/ap-source-output
+application.title=MobiReader
+application.vendor=att
+build.classes.dir=${build.dir}/classes
+build.classes.excludes=**/*.java,**/*.form
+# This directory is removed when the project is cleaned:
+build.dir=build
+build.generated.dir=${build.dir}/generated
+build.generated.sources.dir=${build.dir}/generated-sources
+# Only compile against the classpath explicitly listed here:
+build.sysclasspath=ignore
+build.test.classes.dir=${build.dir}/test/classes
+build.test.results.dir=${build.dir}/test/results
+compile.on.save=true
+compile.on.save.unsupported.javafx=true
+# Uncomment to specify the preferred debugger connection transport:
+#debug.transport=dt_socket
+debug.classpath=\
+    ${run.classpath}
+debug.test.classpath=\
+    ${run.test.classpath}
+# This directory is removed when the project is cleaned:
+dist.dir=dist
+dist.jar=${dist.dir}/MobiReader.jar
+dist.javadoc.dir=${dist.dir}/javadoc
+endorsed.classpath=
+excludes=
+includes=**
+# Non-JavaFX jar file creation is deactivated in JavaFX 2.0+ projects
+jar.archive.disabled=true
+jar.compress=false
+javac.classpath=\
+    ${javafx.runtime}/lib/jfxrt.jar:\
+    ${javafx.runtime}/lib/deploy.jar:\
+    ${javafx.runtime}/lib/javaws.jar:\
+    ${javafx.runtime}/lib/plugin.jar
+# Space-separated list of extra javac options
+javac.compilerargs=
+javac.deprecation=false
+javac.processorpath=\
+    ${javac.classpath}
+javac.source=1.7
+javac.target=1.7
+javac.test.classpath=\
+    ${javac.classpath}:\
+    ${build.classes.dir}:\
+    ${libs.junit_4.classpath}
+javac.test.processorpath=\
+    ${javac.test.classpath}
+javadoc.additionalparam=
+javadoc.author=false
+javadoc.encoding=${source.encoding}
+javadoc.noindex=false
+javadoc.nonavbar=false
+javadoc.notree=false
+javadoc.private=false
+javadoc.splitindex=true
+javadoc.use=true
+javadoc.version=false
+javadoc.windowtitle=
+javafx.binarycss=false
+javafx.deploy.allowoffline=true
+# If true, application update mode is set to 'background', if false, update mode is set to 'eager'
+javafx.deploy.backgroundupdate=false
+javafx.deploy.embedJNLP=true
+javafx.deploy.includeDT=true
+# Set true to prevent creation of temporary copy of deployment artifacts before each run (disables concurrent runs)
+javafx.disable.concurrent.runs=false
+# Set true to enable multiple concurrent runs of the same WebStart or Run-in-Browser project
+javafx.enable.concurrent.external.runs=false
+# This is a JavaFX project
+javafx.enabled=true
+javafx.fallback.class=com.javafx.main.NoJavaFXFallback
+# Main class for JavaFX
+javafx.main.class=mobireader.MobiReader
+javafx.preloader.class=
+# This project does not use Preloader
+javafx.preloader.enabled=false
+javafx.preloader.jar.filename=
+javafx.preloader.jar.path=
+javafx.preloader.project.path=
+javafx.preloader.type=none
+# Set true for GlassFish only. Rebases manifest classpaths of JARs in lib dir. Not usable with signed JARs.
+javafx.rebase.libs=false
+javafx.run.height=600
+javafx.run.width=800
+javafx.runtime=${platforms.Default_JavaFX_Platform.javafx.runtime.home}
+javafx.sdk=${platforms.Default_JavaFX_Platform.javafx.sdk.home}
+# Pre-JavaFX 2.0 WebStart is deactivated in JavaFX 2.0+ projects
+jnlp.enabled=false
+# Main class for Java launcher
+main.class=com.javafx.main.Main
+manifest.file=manifest.mf
+meta.inf.dir=${src.dir}/META-INF
+platform.active=Default_JavaFX_Platform
+run.classpath=\
+    ${dist.jar}:\
+    ${javac.classpath}
+run.test.classpath=\
+    ${javac.test.classpath}:\
+    ${build.test.classes.dir}
+source.encoding=UTF-8
+src.dir=src
+test.src.dir=test

MobiReader/nbproject/project.xml

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+<?xml version="1.0" encoding="UTF-8"?>
+<project xmlns="http://www.netbeans.org/ns/project/1">
+    <type>org.netbeans.modules.java.j2seproject</type>
+    <configuration>
+        <buildExtensions xmlns="http://www.netbeans.org/ns/ant-build-extender/1">
+            <extension file="jfx-impl.xml" id="jfx">
+                <dependency dependsOn="-check-javafx" target="-init-check"/>
+                <dependency dependsOn="-jfx-copylibs" target="-post-jar"/>
+                <dependency dependsOn="-rebase-libs" target="-post-jar"/>
+                <dependency dependsOn="jfx-deployment" target="-post-jar"/>
+                <dependency dependsOn="jar" target="debug"/>
+                <dependency dependsOn="-jfx-copylibs" target="jar"/>
+                <dependency dependsOn="-rebase-libs" target="jar"/>
+                <dependency dependsOn="jar" target="profile"/>
+                <dependency dependsOn="jar" target="run"/>
+            </extension>
+        </buildExtensions>
+        <data xmlns="http://www.netbeans.org/ns/j2se-project/3">
+            <name>MobiReader</name>
+            <explicit-platform explicit-source-supported="true"/>
+            <source-roots>
+                <root id="src.dir"/>
+            </source-roots>
+            <test-roots>
+                <root id="test.src.dir"/>
+            </test-roots>
+        </data>
+    </configuration>
+</project>

MobiReader/src/mobireader/MobiReader.java

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+package mobireader;
+
+import javafx.application.Application;
+import javafx.event.ActionEvent;
+import javafx.event.EventHandler;
+import javafx.scene.Scene;
+import javafx.scene.control.Button;
+import javafx.scene.layout.StackPane;
+import javafx.stage.Stage;
+
+
+public class MobiReader extends Application {
+    
+    @Override
+    public void start(Stage primaryStage) {
+        Button btn = new Button();
+        btn.setText("Display help");
+        btn.setOnAction(new EventHandler<ActionEvent>() {
+            @Override
+            public void handle(ActionEvent event) {
+                System.out.println("Read the docs! Trololo.");
+            }
+        });
+        
+        StackPane root = new StackPane();
+        root.getChildren().add(btn);
+        
+        Scene scene = new Scene(root, 300, 250);
+        
+        primaryStage.setTitle("Hello World!");
+        primaryStage.setScene(scene);
+        primaryStage.show();
+    }
+
+    public static void main(String[] args) {
+        launch(args);
+    }
+}

MobiReader/test/tests/UnzippingJUnitTest.java

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+package tests;
+
+import org.junit.After;
+import org.junit.AfterClass;
+import org.junit.Before;
+import org.junit.BeforeClass;
+import org.junit.Test;
+import static org.junit.Assert.*;
+
+
+public class UnzippingJUnitTest {
+    
+    public UnzippingJUnitTest() {
+    }
+    
+    @BeforeClass
+    public static void setUpClass() {
+    }
+    
+    @AfterClass
+    public static void tearDownClass() {
+    }
+    
+    @Before
+    public void setUp() {
+    }
+    
+    @After
+    public void tearDown() {
+    }
+    
+    @Test
+    public void testBullshit() {
+        assertEquals("10 equals 11", 10, 11);
+    }
+    
+    @Test
+    public void testTruth() {
+        assertEquals("10 does not equal 10", 10, 10);
+    }
+    // TODO add test methods here.
+    // The methods must be annotated with annotation @Test. For example:
+    //
+    // @Test
+    // public void hello() {}
+}